Do all Merle dogs have blue eyes? The Ultimate Guide

There are a number of different merle alleles, which are dealt with on their own page here. These are complicated and require a fairly advanced knowledge of genetics to understand, so I recommend continuing to read this page first to get a hang of the basics. On this page, I refer only to the standard merle allele (M), which produces the classic merle pattern.

** The information on this page provides a basic introduction to merle. New research has shown that the gene is actually more complex than this, so after you have read through the information here, you may wish to do further reading by clicking HERE to go to the new page on advanced merle genetics. I am keeping these sections separate to avoid confusion, and because for many of you, the information here will be enough. However, if you are considering breeding merles then it is important to understand the more advanced genetics **

Merle is a fascinating and varied coat pattern, and there is no doubt that many of the merles shown further down this page are beautiful, unusual and exotic. However, the pictures and information are provided entirely for educational purposes and I do not in any way condone the breeding of dogs deliberately for colour, or breeding for colours or patterns that are not on the breed standard.

Merle affects eumelanin. That means that any black, liver, blue or isabella in the coat, eyes or nose will be merled, whether its the whole of the body, a mask on a sable, shading, brindle stripes, or even a saddle. Phaeomelanin (red) is not usually affected and will generally appear as normal, although there can be exceptions to this.

Health Issues

The merle gene is known to cause a number of health problems, mostly deafness and blindness, and also sun sensitivity and higher rates of skin cancer. These problems are unusual in heterozygous merles (Mm) but more common in homozygous merles (MM). For this reason, two merle dogs should not be bred together, as a general rule, as this will likely result in some double merle puppies. There are some exceptions to this, which are explained on the Advanced page.

The reason merle can be problematic is it can cause lack of pigment in certain vital areas – the eyes and inner ears. Most heterozygous merles have plenty of pigment because they still have an m (non-merle) allele to help them to make it, but double merles often have large white areas where there is no pigment produced at all.

Breeds With the Merle Allele

The merle allele only occurs in a small selection of dog breeds. These include:

Australian Shepherd Catahoula Leopard Dog Norwegian Dunker Border Collie Hungarian Mudi Cardigan Welsh Corgi Collie (Rough and Smooth) Shetland Sheepdog Dachshund (known as dapple) Beauceron (known as harlequin) Bergamasco Pyrenean Shepherd Great Dane

It has also recently been bred into other breeds, including the Chihuahua, American Staffordshire Terrier, American Cocker Spaniel and Pomeranian.

Variation in Patching

The pictures above show the range of markings found in merles. The first dog has very few black patches, and theyre mainly quite small. The second dog shows the normal merle pattern – a mixture of larger and smaller patches, covering roughly 50% of the body. This pattern is generally the most preferred in breed standards. The third dog has very large black patches, sometimes referred to as blanketing. The last dog is known as a minimal merle. It is almost completely black with just a very small amount of merling. This pattern is generally discouraged because it can “hide” the merle gene if the black covers up all the merle in the coat (particularly when combined with white markings).

The dogs above are called “blue merles” because of the bluish colour between the patches in their coat. This is a widely-used term but is actually misleading. Technically they should be “black merles”. Their nose pigment is black and their eyes are brown or blue. They are able to make normal eumelanin in their coat, so their patches are black. If they didnt have the merle gene, they would be solid black. “Blue merle” is misleading because it seems to say that these dogs have blue pigment (dd acting on black – see Dilution page), when in fact they have black.

An example of the genotype of one of the above dogs would be: BBDDEEggMmSSKBKB (most of these arent necessarily homozygous, but I will assume they are for ease). The genotype translates as: no liver colour (BB), no dilution (DD), no mask or recessive red (EE), no greying (gg), merle (Mm), no white spotting (SS), and solid black (KBKB).

Two solid blue merles (the Border Collie also has white in the irish spotting pattern and bronzing on its side, which can sometimes be connected to the merle pattern).

This mixed breed has very heavy patching, and one side of the dog is almost completely solid black. The merling is only visible on the right side (first photo). This dog also has tan points (atat) and white spotting in the irish or pseudo-irish pattern.

These photos, submitted by Karen Palmer, show a dog with very little visible merling. Most of the merling is on the muzzle, with much of the rest of the dog appearing almost solid black-and-tan. These dogs are sometimes described as “cryptic merles”, but this term isnt accurate, as we will explore later.

Variation in Base Colour

The base colour (the diluted parts) on a merle can vary greatly, from a very pale “powder blue” to a dark grey with a ticking pattern on the grey areas, known as a muddy merle or ticked merle. Note that this “ticking” is not the same as the ticking that appears on the white areas of a dog due to the ticking (T) gene, and doesnt have the same genetic basis. Very pale dogs can appear almost white with black spots and can look very similar to a harlequin Great Dane, although only that breed actually has the true harlequin gene. The illustrations on the left and right above show the extremes of the base coat colour. In at least some breeds, the base colour on a merle also seems to darken as the dog ages.

Real life examples of the variation in base colour of merles. The dog on the right also appears to have ghost tan, which can become more obvious in a merle as some of the black pigment is stripped away.

A “muddy” base coat is fairly common in Beaucerons, such as the beautiful example here (submitted by Tanya PS). Interestingly, merle Beaucerons are known as “harlequins”. This simply comes from a French term and is not related to the true harlequin patterning seen in Great Danes.

Kiwi the Australian Shepherd shows how merle can darken with age. The second photo shows her at 10 months old. Photos submitted by Jessica Pilhede.

Eyes and Noses

The random coat dilution caused by merle also affects the eyes and nose. The eyes may be all or partly blue, and the nose may be all or partly pink. Above are examples of “butterfly” noses on merles, which are partly pink. Not all merles have blue eyes or pink noses though, and merles with heavy dark patching are more likely to have normal eye and nose pigment.

The harlequin Great Dane here also shows a butterfly nose and wall eyes (one blue, one brown). Harlequin is a modified type of merle where the areas between the patches are diluted completely to white. See the Merle Modifiers page for more information.

Dilute Spots

Due to the unstable and variable nature of the merle gene, sometimes merles have patches that are only partially diluted, and are between the base and the patch colour. These are known as dilute spots, and they may sometimes appear brownish. The Australian Shepherd above has a large dilute spot on its knee.

We talk about coat colour being “diluted” in a merle, but note that dilute spots dont have anything at all to do with the Dilution gene (d), and are just a normal variation of the merle pattern.

Hidden Merle

Merle can be hidden through the recessive red allele (ee, see the E locus page for more info). Recessive red dogs are unable to produce any eumelanin pigment in their coat, making them solid red (phaeomelanin). Phaeomelanin cannot be merled (at least not in a heterozygous merle – see below for examples of double/homozygous merles, where the merling affects all pigment), so a recessive red dog with the merle allele will just appear to be a normal clear red. Sometimes a recessive red merle will have blue or partially blue eyes, but otherwise there may be no indication that the merle gene is present. These dogs are sometimes called “phantom” merles.

Recessive red and merle can be a dangerous combo, simply because you may not know that a recessive red dog is a merle. The two genes occur together in a number of breeds, including Pomeranians and Chihuahuas, and in such breeds its advisable to never breed a clear red dog (with any merle in its ancestry) to a merle, due to the risk of accidentally breeding double merles. Clear sable can “hide” merle almost as effectively as recessive red. A clear sable is one with no dark (eumelanin) hairs in its coat, and clear sables may be almost indistinguishable from recessive reds. For this reason, care should be taken when breeding any solid red dogs in breeds where merle is present.

These three dogs are all phantom merles. Juniper (black pigment, left) and Pekoe (blue pigment, middle) are either sables or recessive reds, and have no visible merling at all. Their blue eyes are a clue that they are genetically merle, although blue eyes can also occur entirely separately from the merle gene, so cant be taken as solid proof. Sometimes a light merling pattern can be seen at birth, but this generally fades as the dog ages. Sequoia (right) is a sable merle, and has some very faint visible merling on the head and side. All of these photos were submitted by Laura Kelsh.

Merle can also be hidden by long or wire coats, although the merling should be obvious at birth or if the dog is shaved down.

Merle in Dachshunds is known as “dapple”, but its the same gene as merle in other breeds. This Wirehaired Dachshund is actually a dapple (merle), but its very difficult to tell due to his coat type. Even his eyes are solid brown and dont give any clues as to his true coat pattern. Photos submitted by Abby L.

Double Merles

“Double merle” is a term often used for a merle that is homozygous. That means it has two copies of the dominant M gene, so its genotype is MM. This can severely impair its ability to make pigment.

On a double merle, both eumelanin and phaeomelanin pigments are affected.

Double merles are typically mostly white and may have merle patches on the head and sometimes the body. They do not necessarily have the allele for piebald (although if they do, theyre likely to have even more white than double merles without a white spotting allele), but the MM genotype causes loss of pigment to such an extent that it tends to remain only on the upper areas of the dog – the top of the head, the back and the base of the tail, similar to the extreme spotting pattern. Sometimes double merles are even born completely white. The nose is generally mostly or all pink, and the eyes are generally wall or blue (see eye and nose pages).

Blitz the double merle Aussie, submitted by Jennifer Mclean. Blitz is deaf and has impaired vision. As you can see, Blitzs eyes are small and not formed properly (known as micropthalmia).

Casey the longhaired Dachshund, photos by Mascara from the PKC forum

This Dachshund is a blue (black) double merle with tan (called a double “dapple” in this breed). She has a large amount of colour on her body, but she does have a lot of white on her face. The eye on the side with the white is blue because of the lack of pigment, and she has a butterfly nose.

Photos by Cat of Dog Rad Design

This Border Collie type has a typical double merle coat pattern. However, the full pigment on the nose and around the eyes suggests that she may in fact just be a high-white normal merle with extreme spotting. It would be unusual for a double merle to have so much pigment.

Here we have a probable harlequin double merle. Harlequins are merles with a modifier that changes the way the merle looks (see the page on merle modifiers). The same principles therefore apply to harlequin double merles as do to normal double merles – the patches will generally be smaller and confined to the head and the back, and there will often be a more pronounced lack of pigment around the eyes and nose.

The breeding of double merles is generally problematic, not just because double merle dogs rarely match breed standards (for example, a double merle Dachshund like Casey above would be disqualified for too much white and lack of pigment), but also because of the health problems linked to them. Some double merles are perfectly healthy, but eye defects and deafness (due to lack of pigment in parts of the inner ear) are common, as well as sunburn and skin cancer on exposed pink areas. See the page on health problems for more information.

Photo provided by Tina West

Stanley, the Dachshund above, has relatively little white for a double merle. However, he was born with an abnormally small eye (micropthalmia), which has had to be removed. This is sadly a known issue in some double merles.

At the opposite end of the double merle scale to Casey and Stanley is this completely white Dachshund, Noddy. Noddy is both deaf and blind, showing the very serious consequences of irresponsible double merle breeding.

Noddy the Dachshund. For more photos please see:

White double merle Shelties Sasha and Vixen, submitted by Nancy Edmonds, and Muffin the deaf liver-pigmented double merle Australian Shepherd, submitted by Jennifer Mclean.

A double merle can only be bred from two merles, as it requires an M gene from each parent. However, occasionally merle can be hidden by other genes. A recessive red dog will not display any merle because it is unable to make eumelanin in its coat, and the merle gene only affects eumelanin (black, liver, blue and isabella). A clear sable ( dog with a red coat due to the sable gene, but no visible black sabling) will also not show any merling because there is no eumelanin to be merled, unless it also has a mask (which does show merling). Shaded sables will often show merle at birth, but it tends to fade as the dog grows up, so all that remains on an adult is usually a few darker brownish patches on the coat (which can be hidden very easily by long fur). The greying gene can also make it very difficult to see merle markings, as can the dilution gene (dd), because it dilutes the patches so that there is less of a distinction between them and the base colour. Merle can be very difficult to see on a brindle too, due to the stripes. Lastly, merle can be hidden if the dog has very heavy markings, so a blue merle could appear almost completely black if the patches are large enough – you may need to look very closely to see the grey areas. All of these mean that anyone who breeds merles must be very careful to avoid breeding double merle puppies. Sometimes the hidden merles described above have a blue eye or a butterfly nose, which give away their merle gene, but often there is no sign at all that they are merle. If such a dog is accidentally bred to another merle, some of the puppies will be doubles.

As you can see from these two Dachshunds, sable and recessive red can hide merle very well. Both dogs look like red piebalds, however the “split face” marking seen on both is strongly associated with double merle patterns, as are the blue eyes, and indeed both are double merles. The first photo was submitted by Dee Allison and the others by Stephanie.

Lets quickly have a look at some Punnet squares again to see how merle breeding works. You may need to go back to the Breeding page to understand this if youre not sure what a Punnet square is.

Merle puppies are circled in blue and double merles are circled in red. Non merles are not circled.

Its clear from this that breeding a double merle to a non merle is the only way to get a completely merle litter. Double merle to non merle and merle to non merle are the only “safe” breedings – i.e. the only ones which cannot produce double merle puppies. Breeding merles of any sort (single or double) together is always risky. I havent included a Punnet square for a double/double breeding, but that one is easy enough to work out – each parent can only possibly pass on the M gene, so all puppies will be MM (double).

“Lethal White”

Double merles are often referred to as “lethal whites”. This is an incorrect term. The merle gene is not lethal, however it is problematic, as explained above. Lethal white is a completely separate gene that does not occur in dogs. Its found in horses, where it is recessive, unlike the dominant merle gene in dogs. Lethal white (also known as Overo Lethal White Syndrome) kills 100% of horses that are homozygous for the gene. A lethal white will be completely white with blue eyes. It is unable to produce any pigment, like an albino, and because in horses the cells in the intestine are linked (embryonically) to the cells which control skin pigment, they dont develop properly. The intestine is therefore contracted and lethal white foals are unable to pass faeces. This eventually results in death. There are no genes equivalent to this in dogs.

Merle Look-A-Likes

Sometimes black and white dogs with heavy ticking or roaning can be mistaken for merles. The main giveaway is that a ticked or roaned dog will have very uneven grey areas, with flecks of white showing through. Also, if the dog has tan points, they will be ticked too (if theyre on the “white” areas rather than the black patches), whereas in a merle they would be solid, and the patches on a blue roan or ticked dog will be more regular than on a merle (appearing only on the back and head in the piebald or extreme white pattern, rather than all over the dog). In addition, if the dog has a butterfly nose or any blue in its eyes then it is most likely a merle as these pigment issues do not generally affect roaned dogs.

All of these dogs are merle “look-a-likes”, but none of their breeds (English Cocker Spaniel, Australian Cattle Dog and Basset Bleu de Gascogne) actually carry merle:

Weve now covered the basics of merle and how it works, and unless you have a particular interest in breeding merles, that might well be enough. However, it turns out that there isnt just one version of the M allele, but a number of different ones that produce different effects in the coat (both on their own and in combination with each other).

For some more examples of merle on different coat colours and types, click here to go to the “Merle (continued)” page.

To expand your knowledge of merle and find out more about the different merle alleles, click here to go to the new page on advanced merle genetics.

Quick Summary! No time to read the whole thing? Heres the quick version!

The M locus consists of M (merle), and m (non-merle). A merle dog has problems making eumelanin pigment, causing random patches of dilution in the coat. Most normal-looking merles are Mm, as two copies of the merle gene (MM) generaly results in double merle. Double merles have large amounts of white in their coat and deafness and eye abnormalities are common. All merles may have blue or partially blue eyes, and pink or partially pink noses.

Merle can be completely hidden by recessive red, as recessive red dogs cant make eumelanin pigment and merle only affects eumelanin. A recessive red merle is sometimes known as a phantom merle.

Further Info and Links

The gene causing merle in dogs is PMEL17, also known as SILV. Mutations in SILV have been detected in mice, chickens, horses and they are also thought to occur in humans. In horses, SILV affects eumelanin pigment only and causes the colour “silver” (see link below), and in chickens it causes dominant white, “dun” and “smoky” variations.

Note that due to patents in place, not all laboratories will test for the Merle gene.

Links to studies: Retrotransposon insertion in SILV is responsible for merle patterning of the domestic dog: A missense mutation in PMEL17 is associated with the Silver coat color in the horse:

** Please note that I am not a research scientist, and the information on this page comes from my own knowledge and observation of dogs, observational and testing data provided via e-mail by site visitors, any research papers linked on the page, and the information provided by Dr Sheila M. Schmutz on her excellent website

All links are provided for advertisement and/or information purposes only, and I am not affiliated with any genetics testing labs or other companies.

For further genetics resources, see the Links page

The merle gene dilutes random sections of the coat to a lighter colour (usually grey in a black-pigmented dog), leaving patches of the original colour remaining. The patches can be any size and can be located anywhere on the dog, unlike the patches on a piebald dog (which are generally confined to the body and head). The edges of the patches may appear jagged and torn.

How Does The Merle Gene Work?

The merle gene works by causing a variation in pigment in the hair and skin cells. This creates the mottled pattern that merle dogs are so well known for. It’s technically a dilution gene meaning that it lightens the intensity of other pigments. It simply does it in an uneven pattern.

To understand how the merle gene works, you must first understand how dilution works. For example, think about a blue Pitbull. These dogs are considered very desirable because of their silvery grey color. However, it is not considered an official color. That’s because it’s not blue. It’s just a diluted black.

In the show ring, dilutes are often undesirable because the gene can be unpredictable. It is also hard to standardize a diluted color because every dog will come out differently.

In the case of black dogs, they will have the gene to be black, but they will also carry a gene that dilutes that pigmentation and makes the expression weaker. So instead of having a black dog, you’ll have a dog that’s closer to grey.

The dilution gene works similarly in merle dogs, but it only affects patches instead of affecting the whole dog. That’s why if you look at a blue merle dog, which is really a black dog with the merle dilution gene, you’ll notice that while much of the dog is a slate blue, there are still some patches of black.

These darker patches are where the dilution isn’t as strong, so you can see the original color of the dog if the dilution gene wasn’t present.

In addition to affecting the pigment in the skin and coat, the merle gene, and dilution genes in general, can affect the color of the eyes. That’s why merle dogs are often seen with blue or green colored eyes instead of the typical brown. The normal brown pigmentation is simply not present.

Read Also:

Diagnosis of Merle Eye Anomaly in Dogs

A diluted coat will tip off your veterinarian that your dog may have at least one Merle gene. When it comes to the Merle gene and ocular dysgenesis, any abnormalities that result will be present at birth, allowing for diagnosis at as young as six weeks of age. Your veterinarian will conduct a physical examination of your dog and may recommend that he be seen by a veterinary ophthalmologist, who can look for structural abnormalities in his eyes.

Dog’s with one more two copies of the Merle gene may show changes in their iris (including thinning), a pupil that is off-center, iris coloboma (abnormal development of the iris that looks like a notch or cleft at the pupil’s edge) and the lens of his eye may be out of place. Persistent pupillary membranes or PPMs may be seen; these may be viewed as strands or sheets of tissue that start from your dog’s iris and connect to another part of the iris, lens or cornea. These can be minor or cause significant vision problems. Cataracts (focal or complete) can also occur as a result of the Merle gene.

The back portion of your dog’s eye can also be impacted by the Merle gene. The sclera, which is the white of the eye, can be unusually thin (called scleral ectasia), leading to a staphyloma, which is a bulge that can be present in the front or back of your dog’s eye. The vascular layer at the back of your dog’s eye may not fully develop, call choroidal hypoplasia. Anomalies at the back of your dog’s eye can impact the optic nerve, in severe cases causing blindness. The development of the retina may also be impacted and the reflective layer at the back of your dog’s eye can be missing.

The examination will determine whether there are eye abnormalities present in your dog and how severe they are. Your veterinarian will take those into account when considering whether your dog has at least one copy of the Merle gene.

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